Hello,
I have two crs212-1g-10s-1s+in connected with a pair of Mikrotik SFP modules S-35LC20D + S-53LC20D and a LC/LC 9/125 patch coord of 2 meters.
Both units have RouterOS 6.35.1 with default configuration, except for the management ip addres and the sfp ports autonegotiation (disabled): http://forum.mikrotik.com/t/ccr1036-8g-2s-sfp-problems/72604/1
The SFP modules are detected and with link ok:
But there isn’t any communication between the 2 devices. I can’t ping one unit from each other. And in Neighbours I can’t see the other unit. 
R1 configuration
# jan/02/1970 00:06:29 by RouterOS 6.35.1
# software id = XTQZ-EFRY
#
/interface ethernet
set [ find default-name=ether1 ] name=ether1-master
set [ find default-name=sfp1 ] master-port=ether1-master
set [ find default-name=sfp2 ] advertise=1000M-full auto-negotiation=no master-port=ether1-master
set [ find default-name=sfp3 ] master-port=ether1-master
set [ find default-name=sfp4 ] master-port=ether1-master
set [ find default-name=sfp5 ] master-port=ether1-master
set [ find default-name=sfp6 ] master-port=ether1-master
set [ find default-name=sfp7 ] master-port=ether1-master
set [ find default-name=sfp8 ] master-port=ether1-master
set [ find default-name=sfp9 ] master-port=ether1-master
set [ find default-name=sfp10 ] master-port=ether1-master
set [ find default-name=sfpplus1 ] master-port=ether1-master
/interface wireless security-profiles
set [ find default=yes ] supplicant-identity=MikroTik
/interface ethernet switch port
set 0 per-queue-scheduling=wrr-group0:1,wrr-group0:2,wrr-group0:4,wrr-group0:8,wrr-group0:16,wrr-group0:32,wrr-group0:64,wrr-group0:128
set 1 per-queue-scheduling=wrr-group0:1,wrr-group0:2,wrr-group0:4,wrr-group0:8,wrr-group0:16,wrr-group0:32,wrr-group0:64,wrr-group0:128
set 2 per-queue-scheduling=wrr-group0:1,wrr-group0:2,wrr-group0:4,wrr-group0:8,wrr-group0:16,wrr-group0:32,wrr-group0:64,wrr-group0:128
set 3 per-queue-scheduling=wrr-group0:1,wrr-group0:2,wrr-group0:4,wrr-group0:8,wrr-group0:16,wrr-group0:32,wrr-group0:64,wrr-group0:128
set 4 per-queue-scheduling=wrr-group0:1,wrr-group0:2,wrr-group0:4,wrr-group0:8,wrr-group0:16,wrr-group0:32,wrr-group0:64,wrr-group0:128
set 5 per-queue-scheduling=wrr-group0:1,wrr-group0:2,wrr-group0:4,wrr-group0:8,wrr-group0:16,wrr-group0:32,wrr-group0:64,wrr-group0:128
set 6 per-queue-scheduling=wrr-group0:1,wrr-group0:2,wrr-group0:4,wrr-group0:8,wrr-group0:16,wrr-group0:32,wrr-group0:64,wrr-group0:128
set 7 per-queue-scheduling=wrr-group0:1,wrr-group0:2,wrr-group0:4,wrr-group0:8,wrr-group0:16,wrr-group0:32,wrr-group0:64,wrr-group0:128
set 8 per-queue-scheduling=wrr-group0:1,wrr-group0:2,wrr-group0:4,wrr-group0:8,wrr-group0:16,wrr-group0:32,wrr-group0:64,wrr-group0:128
set 9 per-queue-scheduling=wrr-group0:1,wrr-group0:2,wrr-group0:4,wrr-group0:8,wrr-group0:16,wrr-group0:32,wrr-group0:64,wrr-group0:128
set 10 per-queue-scheduling=wrr-group0:1,wrr-group0:2,wrr-group0:4,wrr-group0:8,wrr-group0:16,wrr-group0:32,wrr-group0:64,wrr-group0:128
set 11 per-queue-scheduling=wrr-group0:1,wrr-group0:2,wrr-group0:4,wrr-group0:8,wrr-group0:16,wrr-group0:32,wrr-group0:64,wrr-group0:128
set 12 per-queue-scheduling=wrr-group0:1,wrr-group0:2,wrr-group0:4,wrr-group0:8,wrr-group0:16,wrr-group0:32,wrr-group0:64,wrr-group0:128
/ip address
add address=192.168.88.1/24 comment=defconf interface=ether1-master network=192.168.88.0
/system identity
set name=R1
/system routerboard settings
set protected-routerboot=disabled
R2 configuration
# jan/02/1970 00:09:43 by RouterOS 6.35.1
# software id = ADL1-DLZ5
#
/interface ethernet
set [ find default-name=ether1 ] name=ether1-master
set [ find default-name=sfp1 ] master-port=ether1-master
set [ find default-name=sfp2 ] advertise=1000M-full auto-negotiation=no \
master-port=ether1-master
set [ find default-name=sfp3 ] master-port=ether1-master
set [ find default-name=sfp4 ] master-port=ether1-master
set [ find default-name=sfp5 ] master-port=ether1-master
set [ find default-name=sfp6 ] master-port=ether1-master
set [ find default-name=sfp7 ] master-port=ether1-master
set [ find default-name=sfp8 ] master-port=ether1-master
set [ find default-name=sfp9 ] master-port=ether1-master
set [ find default-name=sfp10 ] master-port=ether1-master
set [ find default-name=sfpplus1 ] master-port=ether1-master
/interface wireless security-profiles
set [ find default=yes ] supplicant-identity=MikroTik
/interface ethernet switch port
set 0 per-queue-scheduling="wrr-group0:1,wrr-group0:2,wrr-group0:4,wrr-group0:8,\
wrr-group0:16,wrr-group0:32,wrr-group0:64,wrr-group0:128"
set 1 per-queue-scheduling="wrr-group0:1,wrr-group0:2,wrr-group0:4,wrr-group0:8,\
wrr-group0:16,wrr-group0:32,wrr-group0:64,wrr-group0:128"
set 2 per-queue-scheduling="wrr-group0:1,wrr-group0:2,wrr-group0:4,wrr-group0:8,\
wrr-group0:16,wrr-group0:32,wrr-group0:64,wrr-group0:128"
set 3 per-queue-scheduling="wrr-group0:1,wrr-group0:2,wrr-group0:4,wrr-group0:8,\
wrr-group0:16,wrr-group0:32,wrr-group0:64,wrr-group0:128"
set 4 per-queue-scheduling="wrr-group0:1,wrr-group0:2,wrr-group0:4,wrr-group0:8,\
wrr-group0:16,wrr-group0:32,wrr-group0:64,wrr-group0:128"
set 5 per-queue-scheduling="wrr-group0:1,wrr-group0:2,wrr-group0:4,wrr-group0:8,\
wrr-group0:16,wrr-group0:32,wrr-group0:64,wrr-group0:128"
set 6 per-queue-scheduling="wrr-group0:1,wrr-group0:2,wrr-group0:4,wrr-group0:8,\
wrr-group0:16,wrr-group0:32,wrr-group0:64,wrr-group0:128"
set 7 per-queue-scheduling="wrr-group0:1,wrr-group0:2,wrr-group0:4,wrr-group0:8,\
wrr-group0:16,wrr-group0:32,wrr-group0:64,wrr-group0:128"
set 8 per-queue-scheduling="wrr-group0:1,wrr-group0:2,wrr-group0:4,wrr-group0:8,\
wrr-group0:16,wrr-group0:32,wrr-group0:64,wrr-group0:128"
set 9 per-queue-scheduling="wrr-group0:1,wrr-group0:2,wrr-group0:4,wrr-group0:8,\
wrr-group0:16,wrr-group0:32,wrr-group0:64,wrr-group0:128"
set 10 per-queue-scheduling="wrr-group0:1,wrr-group0:2,wrr-group0:4,wrr-group0:8\
,wrr-group0:16,wrr-group0:32,wrr-group0:64,wrr-group0:128"
set 11 per-queue-scheduling="wrr-group0:1,wrr-group0:2,wrr-group0:4,wrr-group0:8\
,wrr-group0:16,wrr-group0:32,wrr-group0:64,wrr-group0:128"
set 12 per-queue-scheduling="wrr-group0:1,wrr-group0:2,wrr-group0:4,wrr-group0:8\
,wrr-group0:16,wrr-group0:32,wrr-group0:64,wrr-group0:128"
/ip address
add address=192.168.88.2/24 comment=defconf interface=ether1-master network=\
192.168.88.0
/system identity
set name=R2
/system routerboard settings
set protected-routerboot=disabled
Please any help will be appreciated.