Are there any traffic monitoring tool that work wells with Mikrotik?

As Mikrotik supports various types of flows (Netflow V5/V9 or IPFIX), most reporting applications work just fine. You may need to buy an application as there are not too many free open source collectors available.

https://www.google.com/search?q=Netflow ... g+software

Work great for me !

http://www.observium.org/

PRTG Network Monitor gives you 100 sensors for free. A very nice commercial network management system.
https://www.paessler.com/howto-free-network-monitoring

Windows only