Customers connected via PPPoE are unable to get to some websites after we upgraded from 2.8.28 to 2.9.25. Changing the MTU isn't fixing the problem. Turning on the transparent proxy fixed some Linksys routers but a customers using Mikrotik as his router is having the same issue.
The transparent proxy seems to be just a hack to the real problem. It sounds like a lot of people are having this issue, did PPPoE break in version 2.9?