Adding my experience to the port flapping issue on an RB3011 UiAS:
After receiving my RB3011 I updated it by setting it to the stable-branch and going for 6.48. I noticed that the ports on switch2 where randomly going up/down. Connected at that time where ether6 to a Mikrotik CRS as Trunk-Port and ether9, connected to the same CRS as an accesspoint. Assuming that I did a configuration mistake and not really sure if I knew what I was doing I disabled ether9, changed cables etc. and finally, being desperate did a reboot, thinking that a "loop" might break. Well, that worked.
All of a sudden, ether1 and ether2 started flapping two days ago. The only changes done during the time in question was to change routing on the vpn-gateway attached to ether2 and working on access-lists on capsman. The flapping was again very irregular. 2-3 flapps every 10 minutes then again flapping 2-3 times per minute for several minutes. Changing speed and auto-negotiation on ether1 and the connected fritzbox made no difference. Maybe the vpn-gateway has an issue, e.g. faulty usb-ether on the NanoPI R2S? Disconnecting the vpn-gateway connected to ether2 on one side and the fritzbox on the other side made no difference, except that only ether1 flapped. During that time and up to now, no flapping on ether-ports on the second switch-chip.
Sample log looks like this:
2021-01-29 08:12:53 (no unique labels) ether2 link down
2021-01-29 08:12:53 (no unique labels) ether1 link down
2021-01-29 08:12:41 (no unique labels) ether2 link up (speed 1G, full duplex)
2021-01-29 08:12:40 (no unique labels) ether1 link up (speed 1G, full duplex)
2021-01-29 08:12:38 (no unique labels) ether2 link down
2021-01-29 08:12:38 (no unique labels) ether1 link down
2021-01-29 08:11:58 (no unique labels) ether2 link up (speed 1G, full duplex)
2021-01-29 08:11:57 (no unique labels) ether1 link up (speed 1G, full duplex)
2021-01-29 08:11:55 (no unique labels) ether2 link down
2021-01-29 08:11:55 (no unique labels) ether1 link down
2021-01-29 08:11:12 (no unique labels) ether2 link up (speed 1G, full duplex)
2021-01-29 08:11:10 (no unique labels) ether1 link up (speed 1G, full duplex)
2021-01-29 08:11:08 (no unique labels) ether2 link down
2021-01-29 08:11:08 (no unique labels) ether1 link down
Then I downgraded by setting the update-channel to long-term and "downgraded" to ROS 6.46.8 longterm. Not one up/down over the last 2 hours. Not sure if this just a lucky moment, or rather lucky hours, or if this is now stable. In case flapping comes back, I'll post an update here.