Hello,
is there any solution to programatically ad / edit devices in the dude server?
I have to create a map that has 1000+ devices and doing that by hand will take way too much
maintaining the map after creating it also will take too much time to edit devices one by one

No. MikroTik never finished the interface. They haven't said why they can't make any development progress, but there hasn't been any for at least a couple of years.
It's all rather pathetic.